test sequencing

No description specified

Attributes

Name	Type	Description	PID	ISA Tag	Unit
Input*	Registered Sample List - /templates/12	Existing Samples that represent input.	-	-	-
library_name*	String	Name of the library. This is the output of the library contruction step. This can be the experiment id.	-	other_material	-
library_construction_protocol	String	Free form text describing the protocol by which the sequencing library was constructed.	-	protocol	-
design_description	String	The design of the library including details of how it was constructed.	-	parameter_value	-
library_source	Controlled Vocabulary - library_source	The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation)	-	parameter_value	-
library_strategy	Controlled Vocabulary - library_strategy	Sequencing technique intended for this library (SRA 1.2 documentation)	-	parameter_value	-
library_selection	Controlled Vocabulary - library_selection	Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation)	-	parameter_value	-
library_layout	Controlled Vocabulary - library_layout	specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified.	-	parameter_value	-
insert_size	String	Insert size for paired reads.	-	parameter_value	-
platform	Controlled Vocabulary - platform	a parameter to report the sequencing instrument model and make	-	parameter_value	-
instrument_model	Controlled Vocabulary - instrument_model	a parameter to report the sequencing instrument model and make	-	parameter_value	-
accession	String	ENA experiment accession code. Provided by ENA after submission.	-	other_material_characteristic	-

Name

Type

Description

PID

ISA Tag

Unit

Input*

Registered Sample List - /templates/12

Existing Samples that represent input.

library_name*

String

Name of the library. This is the output of the library contruction step. This can be the experiment id.

other_material

library_construction_protocol

String

Free form text describing the protocol by which the sequencing library was constructed.

protocol

design_description

String

The design of the library including details of how it was constructed.

parameter_value

library_source

Controlled Vocabulary - library_source

The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation)

parameter_value

library_strategy

Controlled Vocabulary - library_strategy

Sequencing technique intended for this library (SRA 1.2 documentation)

parameter_value

library_selection

Controlled Vocabulary - library_selection

Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation)

parameter_value

library_layout

Controlled Vocabulary - library_layout

specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified.

parameter_value

insert_size

String

Insert size for paired reads.

parameter_value

platform

Controlled Vocabulary - platform

a parameter to report the sequencing instrument model and make

parameter_value

instrument_model

Controlled Vocabulary - instrument_model

a parameter to report the sequencing instrument model and make

parameter_value

accession

String

ENA experiment accession code. Provided by ENA after submission.

other_material_characteristic

test sequencing

Attributes

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