CropXR source

No description specified

Attributes

Name	Type	Description	PID	ISA Tag	Unit
Source Name*	String	Sources are considered as the starting biological material used in a study.	-	source	-
country*	Controlled Vocabulary - country	The country (ISO 3166-1 full name)	-	source_characteristic	-
taxon_id*	Integer	NCBI Taxonomy Identifier number ID. This is appropriate for individual organisms and some environmental samples.	-	source_characteristic	-
species name	String	Scientific Latin name of the species, excluding the names of people who gave the name to the species.	-	source_characteristic	-
latitude	String	The geographical origin of the sample as defined by latitude.	-	source_characteristic	-
longitude	String	The geographical origin of the sample as defined by longitude.	-	source_characteristic	-
altitude	String	Altitude of the sample origin location, provided in metres (m). Can be found at https://en-gb.topographic-map.com/	-	source_characteristic	-
age	String	Age of the plant from the start of germination in days. Age of subject at the time of sample collection.	-	source_characteristic	-
genotype	String	Name or code for genotype of plant in a genebank.	-	source_characteristic	-
genebank	String	Name of the genebank.	-	source_characteristic	-
ecotype	String	A population within a given species displaying genetically based, phenotypic traits that reflect adaptation to a local habitat.	-	source_characteristic	-
cultivar	String	Cultivar (cultivated variety) of plant from which sample was obtained.	-	source_characteristic	-
sex	String	Sex of the plant under study.	-	source_characteristic	-
seed_batch_id	String	ID of the seed batch often used for crop plants, where genotyping is not feasible for research purposes; one genotypem might have multiple seed batch IDs.	-	source_characteristic	-
growth_conditions	String	Description of growth conditions before the treatment.	-	source_characteristic	-
growth_facility	String	Type of facility where the sampled plant was grown.	-	source_characteristic	-

Name

Type

Description

PID

ISA Tag

Unit

Source Name*

String

Sources are considered as the starting biological material used in a study.

source

country*

Controlled Vocabulary - country

The country (ISO 3166-1 full name)

source_characteristic

taxon_id*

Integer

NCBI Taxonomy Identifier number ID. This is appropriate for individual organisms and some environmental samples.

source_characteristic

species name

String

Scientific Latin name of the species, excluding the names of people who gave the name to the species.

source_characteristic

latitude

String

The geographical origin of the sample as defined by latitude.

source_characteristic

longitude

String

The geographical origin of the sample as defined by longitude.

source_characteristic

altitude

String

Altitude of the sample origin location, provided in metres (m). Can be found at https://en-gb.topographic-map.com/

source_characteristic

age

String

Age of the plant from the start of germination in days. Age of subject at the time of sample collection.

source_characteristic

genotype

String

Name or code for genotype of plant in a genebank.

source_characteristic

genebank

String

Name of the genebank.

source_characteristic

ecotype

String

A population within a given species displaying genetically based, phenotypic traits that reflect adaptation to a local habitat.

source_characteristic

cultivar

String

Cultivar (cultivated variety) of plant from which sample was obtained.

source_characteristic

sex

String

Sex of the plant under study.

source_characteristic

seed_batch_id

String

ID of the seed batch often used for crop plants, where genotyping is not feasible for research purposes; one genotypem might have multiple seed batch IDs.

source_characteristic

growth_conditions

String

Description of growth conditions before the treatment.

source_characteristic

growth_facility

String

Type of facility where the sampled plant was grown.

source_characteristic

CropXR source

Attributes

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