CropXR sample

No description specified

Attributes

Name	Type	Description	PID	ISA Tag	Unit
Input*	Registered Sample List - /templates/22	Existing study sources that are the input.	-	-	-
subject_id*	String	Unique id that identifies the major output. This can be the sample id.	-	sample	-
title*	String	Short desciptive title of the sample.	-	sample_characteristic	-
description	String	Free-form text describing the sample.	-	sample_characteristic	-
type*	String	Protocol name for the creation of the sample.	-	protocol	-
collection_date	String	Date of the sample collection.	-	parameter_value	-
biochemical_extraction_date	String	Date of the extraction of molecules for sequencing.	-	parameter_value	-
sequencing_submission_date	String	Date of submission for sequencing.	-	parameter_value	-
plant_structure_ontology	String	Ontology term for plant structure. Find at https://browser.planteome.org/amigo/term/PO:0025007, http://purl.obolibrary.org/obo/PO_0025131	-	sample_characteristic	-
plant_structure	String	Name of plant structure that the sample was obtained from. Description of the plant_structure_ontology.	-	sample_characteristic	-
plant_developmental_stage_text	String	Description of the developmental stage.	-	sample_characteristic	-
plant_developmental_stage_ontology	String	Ontology term that describes developmental stage. http://purl.obolibrary.org/obo/PO_0025131 ; https://ontobee.org/ontology/TO ; https://bioportal.bioontology.org/ontologies/PTO; https://www.julius-kuehn.de/en/jki-publication-series/bbch-scale/	-	sample_characteristic	-
spatial_distribution	String	Type and value of a spatial coordinate (georeference or relative) or level of observation (plot:45, subblock:7, block:2).	-	sample_characteristic	-
external_id	String	Identifier for sample or observation unit in a persistent repository (ENA/BioSamples).	-	sample_characteristic	-
remarks	Text	Other notes about the sample.	-	sample_characteristic	-

Name

Type

Description

PID

ISA Tag

Unit

Input*

Registered Sample List - /templates/22

Existing study sources that are the input.

subject_id*

String

Unique id that identifies the major output. This can be the sample id.

sample

title*

String

Short desciptive title of the sample.

sample_characteristic

description

String

Free-form text describing the sample.

sample_characteristic

type*

String

Protocol name for the creation of the sample.

protocol

collection_date

String

Date of the sample collection.

parameter_value

biochemical_extraction_date

String

Date of the extraction of molecules for sequencing.

parameter_value

sequencing_submission_date

String

Date of submission for sequencing.

parameter_value

plant_structure_ontology

String

Ontology term for plant structure. Find at https://browser.planteome.org/amigo/term/PO:0025007, http://purl.obolibrary.org/obo/PO_0025131

sample_characteristic

plant_structure

String

Name of plant structure that the sample was obtained from. Description of the plant_structure_ontology.

sample_characteristic

plant_developmental_stage_text

String

Description of the developmental stage.

sample_characteristic

plant_developmental_stage_ontology

String

Ontology term that describes developmental stage. http://purl.obolibrary.org/obo/PO_0025131 ; https://ontobee.org/ontology/TO ; https://bioportal.bioontology.org/ontologies/PTO; https://www.julius-kuehn.de/en/jki-publication-series/bbch-scale/

sample_characteristic

spatial_distribution

String

Type and value of a spatial coordinate (georeference or relative) or level of observation (plot:45, subblock:7, block:2).

sample_characteristic

external_id

String

Identifier for sample or observation unit in a persistent repository (ENA/BioSamples).

sample_characteristic

remarks

Text

Other notes about the sample.

sample_characteristic

CropXR sample

Attributes

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