sample collection
View Samples
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SEEK ID: https://resiliencehub-catalogue01.ewi.tudelft.nl/templates/6
Submitter: System
Projects: Default Project
Version: 1.0.0
Group: CropXR sequencing
1 Sample type is referencing this Template
ISA Level: study sample
Organism: any
Parent Template: None
Child Templates:Attributes
| Name | Type | Description | PID  | ISA Tag | Unit |
|---|---|---|---|---|---|
| Input* | Registered Sample List - /templates/6 | Existing Samples in DataHub that represent input for this protocol. | - | - | - |
| sample collection | String | type of assay or experimental step performed. | - | protocol | - |
| Sample Name* | String | Name of the major output resulting from the application of the protocol. | - | sample | - |
| title* | String | Short text to describe the sample | - | sample_characteristic | - |
| plant_structure_ontology | String | Ontology term for plant structure. Find at https://browser.planteome.org/amigo/term/PO:0025007, http://purl.obolibrary.org/obo/PO_0025131 | - | sample_characteristic | - |
| plant_structure | String | Name of plant structure that the sample was obtained from. Description of the plant_structure_ontology. | - | sample_characteristic | - |
| plant_developmental_stage_text | String | Description of the developmental stage. | - | sample_characteristic | - |
| plant_developmental_stage_ontology | String | Ontology term that describes developmental stage. http://purl.obolibrary.org/obo/PO_0025131 ; https://ontobee.org/ontology/TO ; https://bioportal.bioontology.org/ontologies/PTO; https://www.julius-kuehn.de/en/jki-publication-series/bbch-scale/ | - | sample_characteristic | - |
| accession | String | ENA experiment accession code. Provided by ENA after submission. | - | sample_characteristic | - |
| biochemical_extraction_date | String | Date of the extraction of molecules for sequencing. | - | sample_characteristic | - |
| submission_date | String | Date in which experiment was submitted to ENA. | - | sample_characteristic | - |
| status | Controlled Vocabulary - status | Status of submission to ENA. | - | sample_characteristic | - |
| remarks | String | Other notes about the sample. | - | sample_characteristic | - |
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