CropXR sample or observation unit tryout
View Samples
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SEEK ID: https://resiliencehub-catalogue01.ewi.tudelft.nl/templates/9
Submitter: System
Projects: Default Project
Version: 1.0.0
Group: CropXR
0 Sample type is referencing this Template
ISA Level: study sample
Organism: any
Parent Template: None
Child Templates:Attributes
| Name | Type | Description | PID  | ISA Tag | Unit |
|---|---|---|---|---|---|
| Input* | Registered Sample List - /templates/9 | Existing study source samples that are the input. | - | - | - |
| subject id* | String | Unique id that identifies the major output. This can be the sample id or observation unit. | - | sample | - |
| title* | String | Short text that can be used to call out sample records in search results or in displays. | - | sample_characteristic | - |
| description | String | Free-form text describing the sample, its origin, and its method of isolation. | - | sample_characteristic | - |
| type* | Controlled Vocabulary - type | Sample or observation unit. | - | sample_characteristic | - |
| collection date (S) | ENA custom date | Date of the sample collection | - | sample_characteristic | - |
| plant_structure_ontology (S) | String | Ontology term for plant structure. Find at https://browser.planteome.org/amigo/term/PO:0025007, http://purl.obolibrary.org/obo/PO_0025131 | - | sample_characteristic | - |
| plant_structure (S) | String | Name of plant structure that the sample was obtained from. Description of the plant_structure_ontology. | - | sample_characteristic | - |
| plant_developmental_stage_text (S) | String | Description of the developmental stage. | - | sample_characteristic | - |
| plant_developmental_stage_ontology (S) | String | Ontology term that describes developmental stage. http://purl.obolibrary.org/obo/PO_0025131 ; https://ontobee.org/ontology/TO ; https://bioportal.bioontology.org/ontologies/PTO; https://www.julius-kuehn.de/en/jki-publication-series/bbch-scale/ | - | sample_characteristic | - |
| accession | String | ENA experiment accession code. Provided by ENA after submission. | - | sample_characteristic | - |
| biochemical_extraction_date (S, E) | String | Date of the extraction of molecules for sequencing. | - | sample_characteristic | - |
| remarks | String | Other notes about the sample. | - | sample_characteristic | - |
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